GgaEX0010653 @ galGal4
Exon Skipping
Gene
ENSGALG00000007511 | ITGB2
Description
integrin beta-2 precursor [Source:RefSeq peptide;Acc:NP_990582]
Coordinates
chr7:7175043-7176845:-
Coord C1 exon
chr7:7176640-7176845
Coord A exon
chr7:7176272-7176438
Coord C2 exon
chr7:7175043-7176032
Length
167 bp
Sequences
Splice sites
3' ss Seq
GATCTGGTTTTGATCCACAGAGT
3' ss Score
7.18
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
TTCCTGCGTGGAGTGCAAGTCATTCAATAGTGGGCCACTGGCAAAGAACTGCTCTGTGGCCTGCACCAGCATCCAGCTGGCTGATGAGCCACGGGCAGGGAGTCGGCAGTGCAAGGAGAAGGACTCTGAGAACTGCTGGATCTCTTTCTATATGGCCCAGGATGATGGAGAGGAGATGTACACCGTCACTGTTGACCCTAAGAAAG
Seq A exon
AGTGCCCAGAGCCTCCCAACATCGCGCTGATCGTAGGCAGCACCATTGCCGGTGTGGCTCTCATTGGCCTGCTGCTCCTGCTGACCTGGCGGCTCTTGACAGAGATCTTTGACCGCCGAGAATACCGCAGGTTTGAGAAGGAGAAATCCAAGGCCAAGTGGAACGAA
Seq C2 exon
GCTGATAATCCTCTGTTCAAGAGTGCCACCACCACCGTCATGAATCCCAGATTTGATGGGCAATGAACTGGAGTGATGCCTGGAAGCACTAGGACCCACCACTAAATAAGGAAACACCAAACAAGGAAATCTCAGGCTCCCACCTCTTCTTCTTTATTGTGTTGTTTTTAACCCTTCTTCCAAGAGACCACCAGTAGCCAGGTGCTGGCTGAGGGGCTGCACAGTACCTATCCTCTCTCCCAGAGCCATCTGGTTGCACTGTAGGAGGAGGGAACAGCAGTGCCATGGACGGGGCTGCAGAGCAGATCTTACCAACAGGCACTCACCCCAGCTCCAGTTTCCATCTGTCCTAGCTCCTGGTGCTAACTTTACTTTGTGGCAGGACCTTCAGACACCAAGTCCCATAGGGACTTAGCACAGAAAGTGCTCTCAATGAGGAGTTCAAAACTGCTATTTCCCTTCTGCTCCAGCAGGCTCCACTCCTAGGCTGCTCCATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511-'20-31,'20-27,22-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(86.2=100)
A:
PF079657=Integrin_B_tail=PD(7.5=10.7),PF087256=Integrin_b_cyt=PU(53.2=44.6)
C2:
PF087256=Integrin_b_cyt=PD(42.6=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCAAGGAGAAGGACTC
R:
GAAGAGGTGGGAGCCTGAGAT
Band lengths:
250-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]