RnoEX0045200 @ rn6
Exon Skipping
Gene
ENSRNOG00000001224 | Itgb2
Description
integrin subunit beta 2 [Source:RGD Symbol;Acc:1305581]
Coordinates
chr20:11777783-11782142:-
Coord C1 exon
chr20:11781943-11782142
Coord A exon
chr20:11778795-11778961
Coord C2 exon
chr20:11777783-11778436
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTGCCTCTTCCTTAGAGT
3' ss Score
8.26
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CTTCTGTGCCGAGTGCCTGAAATTTGATAAGGGCCCCTTTCAGAAGAATTGTAGTGTTCAGTGTGCCAATGTGACGCTGCAGACTGTCCCTTTCAAGAAAAAGCCCTGCAAGGAGAGGGACTCGGAGGGCTGCTGGATAACCTACACTTTGCAGCAGAAGGACGGAAACGCTTACAACATCCATGTGGACGACGATCGAG
Seq A exon
AGTGTGTGAAAGGCCCCAACGTGGCTGCCATCATAGGGGGCACTGTGGCCGGCGTTGTACTGATTGGTGTCCTCCTCCTGGTCATCTGGAAGGCTCTTACCCACCTGACTGACCTCAATGAATACAGACGCTTTGAGAAGGAGAAACTCAAGTCCCAGTGGAACAAC
Seq C2 exon
GACAACCCCCTCTTCAAGAGCGCCACGACAACGGTCATGAACCCTAAGTTTGCTGAGAGCTAGAGAAGGAGTCAGAGGAGACCCCTCCAGACCATGCCTCCTCCCCTCTGCAAATAGAATGTAGCTTACAGCTAGCCCCAGTGCTGCCAAGGATCCAAAAGCCTACTTTGTTTCTTTCCGCCATTATATCAAGGCTGCCAGGGTTTCCACAGACTCATCTTCCGACCTATACAATCTTGCCACAGAGCCTGCAGATTGTTCCGGAGTCCCAAGAGGTTCCACACACGTTTTCGTGCATAAAGGGAAGACAGGGGTCTCAGTAAAGGTGGCCCCAGCTTATTTATATTTAAACTTGTTAGCGTATAAAACTACTATTATATTGTTAACATCCTGTCCGTTGTATTATATGTGAGTGTAAAACTATATCCCACATATATCAGAATCATGTGTGTAAAAATAATAAAGCTTCCATTCAGGGCTGCAGAGATGGCTCAGTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001224-'22-25,'22-21,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(85.9=100)
A:
PF079657=Integrin_B_tail=PD(7.7=10.7),PF087256=Integrin_b_cyt=PU(54.3=44.6)
C2:
PF087256=Integrin_b_cyt=PD(41.3=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGACGCTGCAGACTGTC
R:
TATTTGCAGAGGGGAGGAGGC
Band lengths:
249-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]