BtaEX6004237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147945674-147955949:+
Coord C1 exon
chr1:147945674-147945788
Coord A exon
chr1:147954887-147955088
Coord C2 exon
chr1:147955840-147955949
Length
202 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCATGCTCCCTCCAGGCC
3' ss Score
10.33
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GATTGCAGTGTTCTCCGTGACAGTGCTCCATGACGACCGGATTGTGCTGGTGGCAGAGCAGCGGCCTGACGCCTCCGAGGAGGACAGCTTCCAGTGGATGAGCCGCGTGCTGCAG
Seq A exon
GCCATCGATAGCATCCACCAGGTGGGCGTGTACTGTCTGGCCCTGGTTCCTGCCAACACCTTGCCCAAGGCTCCTCTCGGTGGGATTCACGTTTCTGAAACCAAGCAGCGCTTCCTGGAGGGGATGCTGCACCCGTGTAACGTGTTGATGTGCCCTCACACGTGTGTTACCAACCTTCCCAAGCCTCGGCAGAAGCAGCCAG
Seq C2 exon
AGGTTGGGCCTGCCTCCATGATCGTTGGGAACCTGGTCGCCGGGAAGAGAATCGCTCAGGCCTCAGGGAGGGAGTTGTCGCACCTAGAGGACAGTGAGCAGGCTAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'25-35,'25-33,26-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGTGTTCTCCGTGACAG
R:
TTCCTAGCCTGCTCACTGTCC
Band lengths:
222-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]