RnoEX6062354 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13105943-13108344:+
Coord C1 exon
chr20:13105943-13106057
Coord A exon
chr20:13107317-13107518
Coord C2 exon
chr20:13108231-13108344
Length
202 bp
Sequences
Splice sites
3' ss Seq
AGCACAGGTTTGTCTTCCAGGCC
3' ss Score
6.52
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GATCGCCGTGTTCTCTGTGACTGTTCTGCACGATGACCGGATTGTCTTGGTGGCCGAACAGCGGCCCGACTCTTCGGAGGAAGACAGCTTCCAGTGGATGAGCCGTGTGCTACAG
Seq A exon
GCCATTGACAGCATCCACCAGGTGGGCGTGTACTGTTTGGCCCTGGTTCCCGCCAACACCTTGCCCAAGGCTCCTCTTGGAGGAATTCACATTTCTGAAACGAAGCAACGCTTCCTGGAAGGGACGCTACACCCATGTAACGTGTTGATGTGCCCTCACACATGCGTTACCAACCTTCCCAAGCCTCGCCAGAAACAGCCAG
Seq C2 exon
AAGTCGGACCAGCCTCCATGATTGTTGGGAACCTGGTTGCCGGAAAGAGGATCGCACAGGCCTCTGGGAGAGAGCTGGCCCACCTGGAGGACAGTGACCAGGCTCGCAAGGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-'31-36,'31-34,32-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGCCGTGTTCTCTGTGAC
R:
TACCTTGCGAGCCTGGTCA
Band lengths:
228-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]