MmuEX6049161 @ mm9
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75742602-75745372:-
Coord C1 exon
chr10:75745258-75745372
Coord A exon
chr10:75743421-75743622
Coord C2 exon
chr10:75742602-75742711
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTAGAGCTTTTGCCTTCCAGGCC
3' ss Score
4.39
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GATCGCTGTGTTCTCTGTGACTGTGCTGCACGATGACCGGATTGTCTTGGTGGCTGAGCAGCGGCCTGACGCTTCGGAGGAAGACAGCTTCCAATGGATGAGCCGTGTGCTACAG
Seq A exon
GCCATCGACAGCATCCACCAGGTGGGTGTGTACTGTTTGGCCCTAGTTCCTGCCAACACTTTGCCCAAGGCTCCTCTGGGAGGAATTCACATTTCTGAAACGAAGCAGCGCTTTCTGGAAGGGACGCTCCACCCATGTAACGTGTTGATGTGCCCTCACACGTGCGTTACCAACCTTCCCAAGCCTCGCCAGAAACAGCCAG
Seq C2 exon
AAGTTGGACCAGCCTCGATGATTGTTGGGAACCTGGTTGCTGGAAAAAGGATCGCACAGGCCTCTGGGAGAGAGCTGGCCCACCTGGAGGACAGCGACCAGGCTCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGCTGTGTTCTCTGTGACT
R:
GAGCCTGGTCGCTGTCCTC
Band lengths:
220-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: