HsaEX6006739 @ hg38
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46549771-46551743:+
Coord C1 exon
chr21:46549771-46549885
Coord A exon
chr21:46550543-46550744
Coord C2 exon
chr21:46551634-46551743
Length
202 bp
Sequences
Splice sites
3' ss Seq
ACAGGGTCCTTCCCTTTCAGGCC
3' ss Score
9.5
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GATCGCTGTGTTCTCTGTGACCGTGCTGCACGACGACCGGATTGTCCTGGTGGCTGAGCAGCGGCCGGATGCCTCGGAGGAGGACAGCTTCCAGTGGATGAGCCGTGTGCTGCAG
Seq A exon
GCCATTGATAGCATCCACCAGGTGGGCGTGTACTGTCTGGCCCTGGTTCCTGCCAACACCTTGCCCAAGGCTCCTCTCGGAGGGATTCACATTTCTGAAACCAAACAGCGCTTTCTGGAAGGGACGCTGCACCCGTGTAATGTGCTGATGTGCCCTCACACCTGTGTTACCAACCTCCCCAAACCTCGTCAGAAACAACCAG
Seq C2 exon
AGGTTGGACCAGCCTCAATGATCGTGGGGAACCTGGTTGCTGGGAAGAGAATCGCTCAGGCTTCCGGGAGAGAGCTCGCCCACCTGGAGGACAGCGACCAGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTCTCTGTGACCGTGC
R:
CTTCCGTGCCTGGTCGCT
Band lengths:
220-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains