GgaEX0008880 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6919701-6921764:-
Coord C1 exon
chr7:6921650-6921764
Coord A exon
chr7:6920334-6920535
Coord C2 exon
chr7:6919701-6919810
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTCTCTATCAAGGCA
3' ss Score
8.33
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GATAGCAGTTTTTTCTGTGACGGTTTTGCATGATGATCGAATAGTGCTTGTGGCAGAGCAGCGCCCTGATGCGTCAGAGGAGGACAGTTTTCAGTGGATGAGCAGGGTTCTACAG
Seq A exon
GCAATTGATAGCATTCACCAAGTGGGCGTCTACTGTCTTGCCTTGGTGCCAGCCAACACTTTGCCAAAAGCACCACTTGGAGGAATTCATATTTCAGAAACCAAGCAGCGCTTTTTAGAGGGTGCATTGCACCCTTGTAATGTCTTAATGTGCCCACATACTTGTGTTACTAACCTGCCTAAGCCTCGACAGAAACAACCGG
Seq C2 exon
ATGTTGGTCCTGCCTCAATGATAGTGGGAAACCTTGTTGCTGGAAAGAGAATTGCACAAGCCTCAGGGAGAGATGTTACCCAGCTGGAGGATAACGATCAGGCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'34-39,'34-38,37-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.162
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTGTGACGGTTTTGCATGA
R:
TCTTGCCTGATCGTTATCCTCCA
Band lengths:
212-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]