DreEX0026990 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:600937-603740:-
Coord C1 exon
chr9:603626-603740
Coord A exon
chr9:601115-601322
Coord C2 exon
chr9:600937-601037
Length
208 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGTGTGGTTGTCAGGCT
3' ss Score
6.24
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GATCGCAGTGTTTTCTGTGTCGGTGCTGCATGATGAGCGGATAGTAGTGGTGGCGGAGCAGAGACCAGACGCTTCAGAGGAGGACAGCTTTCAGTGGATGAGCCGAGTGCTGCAG
Seq A exon
GCTATCGACAGCATCCATCAGGTGGGCGTGTACTGTCTGGCTCTGGTTCCAGCAAACACACTCCCCAAAGCTCCTCTTGGCGGCATCCACATCTCTGAGAGCAAGCAGCGCTTCCTGGAGGGAGCCCTGCACCCCTGCAACGTGCTCATGTGCCCACACACCTGCGTCACCAACCTGCCCAAACCCAGACAGAAGCAGCCCGGCACCG
Seq C2 exon
AGGTGGGTCCGGCTTCTATGATCGTGGGAAACCTGGTGGCAGGAAAGAGGATTGCACAGGCCTGTGGCAGAGACGTGACCCAGCTGGAGGACCACGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'26-28,'26-27,28-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGTGTTTTCTGTGTCGG
R:
GGTCGTGGTCCTCCAGCT
Band lengths:
212-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]