BtaEX6004242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147918566-147920741:+
Coord C1 exon
chr1:147918566-147918659
Coord A exon
chr1:147919590-147919709
Coord C2 exon
chr1:147920627-147920741
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACATCCTGCTCCCCTGCAGCCC
3' ss Score
8.91
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AGTATCTTGAAGAGGATACATGTGGTCAGCATCCCATATGCGCTGATGAAGGCGAACCCACTCTCCTGGATTCAGAAAGTGTGTGTGTATAAAG
Seq A exon
CCCAAGCTGCACTGGTGAAGTCCCGCGACATGCATTGGTCTCTCTTGGCTCAGCGAGGTCAGAGGGACGTCAGCCTCAGCTCCCTGCGCCTGCTGATCGTGGCTGATGGTGCAAACCCCT
Seq C2 exon
GGTCCATATCCTCCTGTGATGCGTTCCTCAACGTCTTCCAGGCCAGAGGGCTGAGGCCAGAGGTCATCTGCCCCTGTGCCAGCTCGCCGGAGGCACTCACCGTGGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'14-25,'14-23,15-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAAGAGGATACATGTGGTCA
R:
CGGATGGCCACGGTGAGT
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]