DreEX0026987 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:608357-609224:-
Coord C1 exon
chr9:609131-609224
Coord A exon
chr9:608896-609015
Coord C2 exon
chr9:608357-608471
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTCTATCTGACAGCAC
3' ss Score
7.64
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AGTGTGATGAACAGAATGCATGTGATCAGCATCCCGTACTCACTGATGAAGGTCAACCCTCTGTCCTGGATACAGAAAGTGCACACTTATAAAG
Seq A exon
CACGTGTTGCCGTGGTGAAGTCCAGGGACATGCACTGGTCACTTTTAGCCCAGCGGGATCAGAGAGACATCAGTCTGAGCTCTCTACGCATGCTCATTGTAGCAGACGGAGCCAATCCCT
Seq C2 exon
GGTCCATTTCGTCGTGCGATGCCTTCCTGAATGTGTTTCAGTCGCGCGGGCTGCGTCCTGAGGTCATCTGTCCGTGTGCCAGCTCCTCTGAGGCCCTGACCGTCGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'19-21,'19-20,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGATGAACAGAATGCATGTGA
R:
GGATGGCGACGGTCAGGG
Band lengths:
204-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]