RnoEX6062359 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13094244-13097662:+
Coord C1 exon
chr20:13094244-13094337
Coord A exon
chr20:13095791-13095910
Coord C2 exon
chr20:13097548-13097662
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTACTCCCTTCTGTTTGTAGCCC
3' ss Score
8.85
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGTGTCATGAACAGGATGCACGTTATCAGCATCCCCTACGCCCTAATGAAGGTCAACCCCCTCTCCTGGATCCAGAAAGTGTGTTCCTATAAAG
Seq A exon
CCCGGGCTGCCCTGGTGAAGTCCCGAGATATGCACTGGTCACTCTTGGCACAGCGAGGTCAGAGGGACGTCTGTCTCAGCTCTCTGCGTATGTTGATTGTGGCGGATGGCGCAAACCCAT
Seq C2 exon
GGTCAATATCTTCCTGCGATGCCTTCCTCAACGTCTTCCAGTCTAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCCAGTTCTCCTGAGGCGCTAACAGTAGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATGAACAGGATGCACGT
R:
CTGCGGATGGCTACTGTTAG
Band lengths:
207-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]