HsaEX0019724 @ hg38
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46537446-46539991:+
Coord C1 exon
chr21:46537446-46537539
Coord A exon
chr21:46538483-46538602
Coord C2 exon
chr21:46539877-46539991
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGCCATCCTCTCTCTGCAGCTC
3' ss Score
10.93
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
AGCGTCATGAACAGGATGCACGTGGTCAGCGTCCCCTACGCGCTGATGAAGGCGAACCCACTCTCCTGGATCCAGAAAGTGTGCTTCTATAAAG
Seq A exon
CTCGGGCCGCGCTGGTGAAGTCGCGAGACATGCACTGGTCTCTCCTAGCTCAGCGGGGCCAGAGGGACGTCAGCCTCAGCTCACTGCGCATGCTGATTGTGGCCGATGGTGCCAACCCGT
Seq C2 exon
GGTCGATCTCCTCCTGTGACGCCTTCCTCAACGTCTTCCAGTCCAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCAAGTTCTCCTGAGGCGCTGACTGTCGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCATGAACAGGATGCACGT
R:
CAGTCAGCGCCTCAGGAGAA
Band lengths:
194-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development