GgaEX6041726 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6930730-6932915:-
Coord C1 exon
chr7:6932822-6932915
Coord A exon
chr7:6932268-6932387
Coord C2 exon
chr7:6930730-6930844
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCATTATTTTCAGCCC
3' ss Score
8.98
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGCGTTATGAACAGGATGCACGTCATCAGTATTCCCTACGCATTAATGAAGGTTAATCCACTTTCCTGGATACAGAAAGTCTGCTCATACAAAG
Seq A exon
CCCGTGTTGCTGTAGTAAAATCACGTGATATGCACTGGTCACTTTTGGCTCAGAGGGATCAGAGAGATGTCAGTCTAAGCTCCTTACGAATGTTAATAGTGGCAGATGGAGCTAATCCAT
Seq C2 exon
GGTCAATATCTTCATGTGATGCCTTCCTGAATGTATTTCAGTCCAGAGGTTTGAGACCTGAGGTAATCTGCCCCTGTGCTAGTTCCTCAGAGGCACTCACTGTTGCTATTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
PF0050123=AMP-binding=FE(10.2=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTATGAACAGGATGCACG
R:
CGAATAGCAACAGTGAGTGCCT
Band lengths:
205-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]