MmuEX6049156 @ mm9
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75755057-75758905:-
Coord C1 exon
chr10:75758812-75758905
Coord A exon
chr10:75757239-75757358
Coord C2 exon
chr10:75755057-75755171
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTACTCTCTTCTCTTTGCAGCCC
3' ss Score
11.45
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGTGTCATGAATAGGATGCATGTCATCACCATCCCATATGCCCTCATGAAGGTCAACCCACTCTCCTGGATTCAGAAAGTGTGTTCCTATAAAG
Seq A exon
CCCGGGCTGCCCTGGTAAAGTCCCGAGATATGCACTGGTCGCTCTTGGCACAGCGAGGTCAGAGGGATGTCTGTCTCAGCTCTCTGCGCATGTTGATTGTGGCAGACGGCGCTAACCCAT
Seq C2 exon
GGTCAATATCTTCCTGCGATGCCTTCCTCAACGTCTTCCAGTCCAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCCAGTTCTCCTGAGGCGCTGACAGTAGCCATCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.5=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCATGAATAGGATGCATGTCA
R:
CTGCGGATGGCTACTGTCAG
Band lengths:
209-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: