BtaEX6004859 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14058526-14060370:-
Coord C1 exon
chrX:14060213-14060370
Coord A exon
chrX:14059441-14059541
Coord C2 exon
chrX:14058526-14058672
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTCTTCCACTTTCAGCTA
3' ss Score
10.73
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTTTATGAACCACATGAAGCATCATTTGGAACTTGAGAAGCAAAACACTGAGAGTTGGGAAAACCACACCACCTGCCAGCACTGCTACCGTCAGTACCCAACGCCATTCCAACTGCAGTGTCATATTGAGAGTACACATACTCCCCTTGAGTTTTCTA
Seq A exon
CTATTTGTAAAATCTGTGAATTATCATTTGACACTGAACATATTCTTCTGCAACATATGAAGGACACTCATAAACCTGGTGAAATGCCATATATTTGCCAG
Seq C2 exon
GTTTGCCAGTTTAGATCATCATCATTTACTGATGTAGAAACTCATTTTAGAGTGTCCCATGAAAATACTAAGAACTTGCTGTGTCCATTTTGCCTCAAAGTTAGTAGGATGGCAACTCCCTACATGAATCATTACATGAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
PF138941=zf-C2H2_4=PU(12.5=8.8)
C2:
PF138941=zf-C2H2_4=PD(79.2=38.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAACACTGAGAGTTGGGA
R:
TCATGTAGGGAGTTGCCATCCT
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]