MmuEX0053158 @ mm9
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:45911446-45913001:-
Coord C1 exon
chrX:45912844-45913001
Coord A exon
chrX:45912220-45912320
Coord C2 exon
chrX:45911446-45911592
Length
101 bp
Sequences
Splice sites
3' ss Seq
AATGTATTTTTCCCTTTTAGCTA
3' ss Score
9.68
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTTCATGAACCACATGAAACACCACTTGGAACTTGAAAAGCAGAACAACGAGACCTGGGAAAGCCATACTACATGCCAACACTGCTACCGGCAGTACCCCAACCCCTTCCAGCTCCAGTGCCACATTGAGAGTACACATACTCCTCATGATTTTTCTA
Seq A exon
CTATTTGCAAGATCTGTGAATTGTCATTTGAAACAGAGCATATGCTTTTACAACACATGAAGGATACTCATAAACCTGGTGAAATGCCATATATTTGCCAG
Seq C2 exon
GTTTGCCAGTTTAGATCATCAATATTTTCTGATGTAGAAACTCACTTCAGATCATCTCATGAAAACACTAAGAACTTGCTATGTCCGTTTTGCCTCAAAGTTAGTAGAATGGCAACCCCTTATATGAATCACTACATGAGACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-'18-20,'18-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=PU(0.1=0.0)
A:
PF121713=zf-C2H2_jaz=WD(100=61.8)
C2:
PF0164113=SelR=PU(42.0=59.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACATGAAACACCACTTGGA
R:
TGAGGCAAAACGGACATAGCA
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: