HsaEX0073329 @ hg38
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:130220349-130229134:-
Coord C1 exon
chrX:130228977-130229134
Coord A exon
chrX:130227682-130227782
Coord C2 exon
chrX:130220349-130220480
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTTCCACTTTCAGCTA
3' ss Score
11.04
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTTTATGAACCACATGAAACATCACTTGGAACTTGAGAAGCAGAACAATGAAAGCTGGGAAAACCACACCACCTGCCAGCACTGTTACCGGCAATATCCCACACCCTTCCAACTGCAGTGCCACATTGAGAGTACACACACTCCCCATGAGTTTTCTA
Seq A exon
CTATTTGCAAAATCTGTGAATTATCATTTGAAACAGAGCATATTCTTTTACAACATATGAAGGACACCCATAAACCTGGTGAAATGCCATATGTTTGCCAG
Seq C2 exon
AAAAAAGGAGTTCATCGTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277_MULTIEX1-3/5=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.056 A=0.041 C2=0.494
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCACATGAAACATCACTTGG
R:
AAATGTACGATGCTGCGCCTT
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development