HsaEX0073329 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129354323-129363108:-
Coord C1 exon
chrX:129362951-129363108
Coord A exon
chrX:129361656-129361756
Coord C2 exon
chrX:129354323-129354454
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTTCCACTTTCAGCTA
3' ss Score
11.04
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTTTATGAACCACATGAAACATCACTTGGAACTTGAGAAGCAGAACAATGAAAGCTGGGAAAACCACACCACCTGCCAGCACTGTTACCGGCAATATCCCACACCCTTCCAACTGCAGTGCCACATTGAGAGTACACACACTCCCCATGAGTTTTCTA
Seq A exon
CTATTTGCAAAATCTGTGAATTATCATTTGAAACAGAGCATATTCTTTTACAACATATGAAGGACACCCATAAACCTGGTGAAATGCCATATGTTTGCCAG
Seq C2 exon
AAAAAAGGAGTTCATCGTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.056 A=0.103 C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
PF139091=zf-H2C2_5=PU(12.0=8.8)
C2:
PF0164113=SelR=PD(55.1=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCACATGAAACATCACTTGG
R:
AAATGTACGATGCTGCGCCTT
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)