HsaEX0073330 @ hg19
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:25955]
Coordinates
chrX:129354323-129361756:-
Coord C1 exon
chrX:129361656-129361756
Coord A exon
chrX:129360733-129360879
Coord C2 exon
chrX:129354323-129354454
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGCCTTCTTTATATTTCTAGGTT
3' ss Score
8.39
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTATTTGCAAAATCTGTGAATTATCATTTGAAACAGAGCATATTCTTTTACAACATATGAAGGACACCCATAAACCTGGTGAAATGCCATATGTTTGCCAG
Seq A exon
GTTTGCCAGTTTAGATCATCAACATTTTCTGATGTAGAAGCTCATTTTAGAGCAGCCCATGAAAACACTAAGAACTTGCTATGTCCATTTTGCCTCAAAGTTAGTAAAATGGCAACCCCCTACATGAATCATTACATGAAGCATCAG
Seq C2 exon
AAAAAAGGAGTTCATCGTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.103 A=0.041 C2=0.511
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=PU(12.0=8.8)
A:
PF139091=zf-H2C2_5=PD(80.0=40.8),PF0164113=SelR=PU(42.0=59.2)
C2:
PF0164113=SelR=PD(55.1=86.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATTATCATTTGAAACAGAGCA
R:
TTTTGCTCCAGGAGGCAATC
Band lengths:
219-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)