DreEX0088058 @ danRer10
Exon Skipping
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52464941-52468128:+
Coord C1 exon
chr7:52464941-52465041
Coord A exon
chr7:52465120-52465266
Coord C2 exon
chr7:52467994-52468128
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTACTCTTTTGAAGGTT
3' ss Score
9.85
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCAACTGTAAAATATGTGAACTGGCTTTTGAGACTGAACAAGTGCTTCTGGAGCATATGAGGGACAATCACAAACCTGGAGAAATGCCCTATGGCTGTCAG
Seq A exon
GTTTGCAACTACAGGTCGTCCTTCTTCTGCGATGTGGATAACCACTTTCGCACAGTCCATGAAAACACTAAAGACCTGCTTTGTCCCTTTTGTCTGAAAGTTCTTCGCAGCGGCCATATGTACATGCAACACTACATGAGACATCAA
Seq C2 exon
AAAAAGGGGATTCAGAGGTGTGGTAAATGTCGATTAAACTTCCTCACCTACAAGGAAAAAGTGGAACACAAAATACACTTTCACAGAACCTACAGGAAGCCGAGAAACCTTGAAGGATTACCTCCAGGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013-'16-19,'16-16,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=76.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTGTAAAATATGTGAACTGGCT
R:
GGAGGTAATCCTTCAAGGTTTCTCG
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]