BtaEX6053529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53780887-53791718:+
Coord C1 exon
chr10:53780887-53780987
Coord A exon
chr10:53782213-53782359
Coord C2 exon
chr10:53791584-53791718
Length
147 bp
Sequences
Splice sites
3' ss Seq
AATCAGATTTTTTTTTGTAGGTT
3' ss Score
6.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCATTTGCAAAATATGTGAATTGTCATTTGAAACAGAGCATATCCTTTTACAACATATGAAGGACAATCATAAACCTGGTGAAATGCCATATATTTGCCAG
Seq A exon
GTTTGCAATTATAGATCATCATCATTTTCTGATGTAGAAACTCATTTTAGAACATCTCATGAAAACACCAAGAACTTGCTATGTCCATTTTGTCTCAAAGTTATTAAAATTGCAACACCCTATATGCATCATTATATGAAGCATCAG
Seq C2 exon
AAAAAGGGAATACACCGTTGTACAAAATGCAGACTGCAATTTTTAACATGCAAAGAGAAAATGGATCACAAGACTCAGCATCATCGGACATTTATAAAACCTAAACAACTAGAAGGATTGCCTCCTGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486-'19-22,'19-20,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.233
Domain overlap (PFAM):
C1:
PF139091=zf-H2C2_5=PU(12.0=8.8)
A:
PF139091=zf-H2C2_5=PD(80.0=40.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGCAAAATATGTGAATTGTCA
R:
GGAGGCAATCCTTCTAGTTGT
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]