MmuEX0053173 @ mm9
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72122706-72208148:+
Coord C1 exon
chr9:72122706-72122836
Coord A exon
chr9:72171815-72171961
Coord C2 exon
chr9:72208093-72208148
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATAACCTTTTTATTTCTAGGTT
3' ss Score
10.06
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCGCCCAGCAGCCCCGCTCCGCGATGGGAGCCGGAGCGGCCTCGGCGTACACAGCCCGCGCTCCTCCCTCGCCTCCTCCTCTTTCTCCTCCTCCTCAGGGCTCCAGTCAGGCCGAGCCGCTCCGCTCACG
Seq A exon
GTTTGCAATTACAGATCATCATTATTTTCTGAGGTAGAGTCTCATTTTAGAACATCACATGAAAACACTAAGAATTTGCTATGTCCATTCTGCCTCAAAGTTATTAAAATCGCCACGCCCTATATGCATCATTACATGAAGCATCAG
Seq C2 exon
GAAACAGCAAGACATAGTAGAGCTGAAGGAGAGCCAGGAGCATCACATTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-15/27=C1-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.615
Domain overlap (PFAM):
C1:
NA
A:
PF139091=zf-H2C2_5=PD(80.0=40.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGCGTACACAGCCC
R:
TTCCAGAATGTGATGCTCCTGG
Band lengths:
146-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: