GgaEX0021121 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:8656044-8657094:+
Coord C1 exon
chr10:8656044-8656144
Coord A exon
chr10:8656242-8656388
Coord C2 exon
chr10:8656960-8657094
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGTAAAATTTCTTATTTTAGGTA
3' ss Score
7.59
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTATTTGTAAAATCTGTGAATTATCCTTTGAAACAGAACAGGTTCTTTTGCAACATATGAAGGACAATCATAAACCAGGTGAAATGCCGTATGTTTGCCAG
Seq A exon
GTATGCAACTACAGATCCTCAGCTTTTTCAGATGTAGAAACACATTTCAGAACAGTTCATGAAAATACAAAACATCTGCTGTGTCCGTTTTGCCTCAAAGTTATTAAAATCGGAGCACCATATATGCATCATTATATGAGGCATCAG
Seq C2 exon
AAAAAAGGAATATACCGTTGCACTAAGTGTAGGTTGCAGTTTTTGACTTGCAAAGAAAAAATGGATCACAAGACTCAGCATCACCGAACATTTAGAAAACCTAAACAGTTGGAAGGATTGCCTCCTGGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375_CASSETTE2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.444
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=76.5),PF139091=zf-H2C2_5=PU(12.0=8.8)
A:
PF139091=zf-H2C2_5=PD(80.0=40.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTATCCTTTGAAACAGAACAGG
R:
GGAGGCAATCCTTCCAACTGT
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event