MmuEX0053173 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72323000-72329162:+
Coord C1 exon
chr9:72323000-72323100
Coord A exon
chr9:72324008-72324154
Coord C2 exon
chr9:72329028-72329162
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATAACCTTTTTATTTCTAGGTT
3' ss Score
10.06
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCATTTGTAAGATCTGTGAGCTATCATTTGAAACTGAACAGATTCTCTTACAACATATGAAGGATAACCATAAGCCTGGTGAAATGCCATACATCTGCCAG
Seq A exon
GTTTGCAATTACAGATCATCATTATTTTCTGAGGTAGAGTCTCATTTTAGAACATCACATGAAAACACTAAGAATTTGCTATGTCCATTCTGCCTCAAAGTTATTAAAATCGCCACGCCCTATATGCATCATTACATGAAGCATCAG
Seq C2 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAGTTTTTGACATGCAAGGAAAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTGGAAGGACTTCCCCCTGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535-'33-44,'33-38,35-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.387
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=PD(92.6=73.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGTAAGATCTGTGAGCTATCA
R:
TCCAGGGGGAAGTCCTTC
Band lengths:
230-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types