HsaEX1044967 @ hg38
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56668823-56677674:-
Coord C1 exon
chr15:56677574-56677674
Coord A exon
chr15:56676670-56676816
Coord C2 exon
chr15:56668823-56668957
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGCCTTCTTTCTTTTTTTAGGTT
3' ss Score
11.99
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTATTTGTAAAATCTGTGAATTGTCATTTGAAACAGAACATGTTCTTTTACAACATATGAAGGACAATCATAAACCTGGTGAAATGCCATATGTCTGCCAG
Seq A exon
GTTTGTAATTATAGATCATCATCATTTTCTGATGTAGAAACTCATTTTAGAACATCCCATGAAAACACTAAGAACTTGCTATGCCCGTTTTGCCTCAAAGTTATTAAAATTGCAACACCATATATGCATCATTATATGAAGCATCAG
Seq C2 exon
AAAAAAGGAATACATCGTTGTACAAAATGCAGGCTGCAGTTTTTGACATGCAAGGAGAAAATGGATCATAAGACTCAACACCATCGAACATTTATAAAACCTAAACAACTAGAAGGATTGCCTCCTGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-'46-66,'46-64,49-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.020 C2=0.411
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(67.9=55.9)
A:
PF134651=zf-H2C2_2=PD(25.0=14.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATTGTCATTTGAAACAGAACA
R:
GGAGGCAATCCTTCTAGTTGT
Band lengths:
212-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains