GgaEX0021121 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7113542-7114592:+
Coord C1 exon
chr10:7113542-7113642
Coord A exon
chr10:7113740-7113886
Coord C2 exon
chr10:7114458-7114592
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGTAAAATTTCTTATTTTAGGTA
3' ss Score
7.59
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTATTTGTAAAATCTGTGAATTATCCTTTGAAACAGAACAGGTTCTTTTGCAACATATGAAGGACAATCATAAACCAGGTGAAATGCCGTATGTTTGCCAG
Seq A exon
GTATGCAACTACAGATCCTCAGCTTTTTCAGATGTAGAAACACATTTCAGAACAGTTCATGAAAATACAAAACATCTGCTGTGTCCGTTTTGCCTCAAAGTTATTAAAATCGGAGCACCATATATGCATCATTATATGAGGCATCAG
Seq C2 exon
AAAAAAGGAATATACCGTTGCACTAAGTGTAGGTTGCAGTTTTTGACTTGCAAAGAAAAAATGGATCACAAGACTCAGCATCACCGAACATTTAGAAAACCTAAACAGTTGGAAGGATTGCCTCCTGGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375_MULTIEX1-7/16=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.444
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=76.5),PF139091=zf-H2C2_5=PU(12.0=8.8)
A:
PF139091=zf-H2C2_5=PD(80.0=40.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTATCCTTTGAAACAGAACAGG
R:
GGAGGCAATCCTTCCAACTGT
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]