RnoEX0101209 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78901008-78908580:+
Coord C1 exon
chr8:78901008-78901108
Coord A exon
chr8:78902079-78902225
Coord C2 exon
chr8:78908446-78908580
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATAACCTTTTTATTTCTAGGTT
3' ss Score
10.06
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCATTTGTAAAATCTGTGAGCTGTCATTTGAAACTGAACAGATTCTTTTACAACATATGAAGGATAATCATAAACCTGGTGAAATGCCATACATCTGTCAG
Seq A exon
GTTTGCAATTACAGATCATCATTATTTTCTGAGGTAGAGTCTCATTTTAGAACATCGCATGAAAACACTAAGAATTTGCTATGTCCATTCTGCCTCAAAGTTATTAAAATTGCCACACCCTATATGCATCATTACATGAAGCATCAG
Seq C2 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAATTTTTGACATGCAAAGAGAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTAGAAGGACTGCCCCCTGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631_MULTIEX2-2/14=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.289
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=PD(92.6=73.5),PF139091=zf-H2C2_5=PU(12.0=8.8)
A:
PF139091=zf-H2C2_5=PD(80.0=40.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGTAAAATCTGTGAGCTGTCA
R:
TTTTGTTCCAGGGGGCAGTC
Band lengths:
236-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]