BtaEX6004860 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019885 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:14051396-14059541:-
Coord C1 exon
chrX:14059441-14059541
Coord A exon
chrX:14058526-14058672
Coord C2 exon
chrX:14051396-14051527
Length
147 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCTTTATATTTCTAGGTT
3' ss Score
9.87
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTATTTGTAAAATCTGTGAATTATCATTTGACACTGAACATATTCTTCTGCAACATATGAAGGACACTCATAAACCTGGTGAAATGCCATATATTTGCCAG
Seq A exon
GTTTGCCAGTTTAGATCATCATCATTTACTGATGTAGAAACTCATTTTAGAGTGTCCCATGAAAATACTAAGAACTTGCTGTGTCCATTTTGCCTCAAAGTTAGTAGGATGGCAACTCCCTACATGAATCATTACATGAAGCATCAG
Seq C2 exon
AAGAAAGGAATTCATCGTTGCTCACAGTGCAGACTACAATTTTTGACCTACAAGGAGAAACTGGTTCACAAGCTCGAACATCGGACATTTATAAAGCCTAAAGAGCTGGAGGGATTGCCTCCTGGTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019885-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.020 C2=0.227
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PU(12.5=8.8)
A:
PF138941=zf-C2H2_4=PD(79.2=38.8)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGAATTATCATTTGACACTGA
R:
AGGCAATCCCTCCAGCTCTTT
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]