MmuEX6044263 @ mm10
Exon Skipping
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48553978-48559143:-
Coord C1 exon
chrX:48559043-48559143
Coord A exon
chrX:48558269-48558415
Coord C2 exon
chrX:48553978-48554109
Length
147 bp
Sequences
Splice sites
3' ss Seq
AACCTTATTTGTATTTCTAGGTT
3' ss Score
8.6
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTATTTGCAAGATCTGTGAATTGTCATTTGAAACAGAGCATATGCTTTTACAACACATGAAGGATACTCATAAACCTGGTGAAATGCCATATATTTGCCAG
Seq A exon
GTTTGCCAGTTTAGATCATCAATATTTTCTGATGTAGAAACTCACTTCAGATCATCTCATGAAAACACTAAGAACTTGCTATGTCCGTTTTGCCTCAAAGTTAGTAGAATGGCAACCCCTTATATGAATCACTACATGAGACATCAG
Seq C2 exon
AAAAAAGGAATTTATCGTTGCCCGAAATGCAGACTACAATTTTTGACCTCCAAGGAGAAAACAGAACATAAGTTAGAACATCGCACATTTATAAAGCCTAAAGAACTAGAGGGATTGCCTCCTGGGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916-'21-29,'21-27,22-29=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.409
Domain overlap (PFAM):
C1:
NO
A:
PF0164113=SelR=PU(42.0=59.2)
C2:
PF0164113=SelR=PD(55.1=86.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAAGATCTGTGAATTGTCA
R:
TTTTGTCCCAGGAGGCAATC
Band lengths:
230-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types