HsaEX0073330 @ hg38
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:130220349-130227782:-
Coord C1 exon
chrX:130227682-130227782
Coord A exon
chrX:130226759-130226905
Coord C2 exon
chrX:130220349-130220480
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGCCTTCTTTATATTTCTAGGTT
3' ss Score
8.39
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTATTTGCAAAATCTGTGAATTATCATTTGAAACAGAGCATATTCTTTTACAACATATGAAGGACACCCATAAACCTGGTGAAATGCCATATGTTTGCCAG
Seq A exon
GTTTGCCAGTTTAGATCATCAACATTTTCTGATGTAGAAGCTCATTTTAGAGCAGCCCATGAAAACACTAAGAACTTGCTATGTCCATTTTGCCTCAAAGTTAGTAAAATGGCAACCCCCTACATGAATCATTACATGAAGCATCAG
Seq C2 exon
AAAAAAGGAGTTCATCGTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.041 A=0.031 C2=0.494
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATTATCATTTGAAACAGAGCA
R:
TTTTGCTCCAGGAGGCAATC
Band lengths:
219-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development