RnoEX0101189 @ rn6
Exon Skipping
Gene
ENSRNOG00000006797 | Zfp280c
Description
zinc finger protein 280C [Source:RGD Symbol;Acc:1564669]
Coordinates
chrX:135380716-135390112:-
Coord C1 exon
chrX:135390012-135390112
Coord A exon
chrX:135388981-135389127
Coord C2 exon
chrX:135380716-135380847
Length
147 bp
Sequences
Splice sites
3' ss Seq
AACTTTATTTATATTTCTAGGTT
3' ss Score
8.48
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTATTTGCAAAATCTGTGAATTGTCATTTGAAACAGAGCATCTGCTTTTACAACATATGAAGGACACTCATAAACCTGGTGAAATGCCATACATTTGCCAG
Seq A exon
GTTTGCCAGTTTAGGTCATCGATATTTTCTGATGTAGAAACTCACTTTAGATCATCTCACGAAAACACTAAGAACTTGCTATGTCCATTCTGCCTCAAAGTTAGTAGAATGGCAACCCCTTATATGAATCACTACATGAGACATCAG
Seq C2 exon
AAAAAAGGAATTTATCGTTGCCCAAAATGCAGACTACAATTTTTGACCTCCAAGGAGAAAATAGATCATAAGTTAGAACATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006797-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
PF0164113=SelR=PU(41.4=59.2)
C2:
PF0164113=SelR=PD(55.7=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAATCTGTGAATTGTCATTTGA
R:
GGAGGCAATCCTTCTAGTTCTT
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]