BtaEX6005975 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61058828-61060818:-
Coord C1 exon
chrX:61060657-61060818
Coord A exon
chrX:61060367-61060465
Coord C2 exon
chrX:61058828-61058974
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGGGCTTTGCCAGGCA
3' ss Score
6.7
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCCGCCCAGGCCCTCCTGGGCCCCCAGGCCCCCCTGGGCCTGCCTCAGATCAAGGCGACCCTGGAGACCCTGGCTTCCCTGGAATTCCTGGCCCTCAAGGGCCCAAAGGAGACCAAGGAATTCCAGGTTTCTCTGGCCTCCCTGGAGAGCTAGGATTGAAAG
Seq A exon
GCATGAGAGGTGAGCCTGGCTTCATGGGGACTCCAGGCAAGGTTGGACCACCTGGAGACCCAGGACTTCCCGGGATGAAGGGGAAGGCGGGGCCAAGAG
Seq C2 exon
GCTTATCTGGCCCTCGAGGTGCTCCTGGACACACACCCATTGCAGAAGCCATCCAGGCTCCCCCTGGACCCATGGGTCTTCCAGGCATTGATGGAATCCCTGGCCTCATGGGAGACCCTGGGGTCCAAGGACCTGTGGGCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(71.4=81.8),PF0139113=Collagen=PU(23.8=27.3)
A:
PF0139113=Collagen=FE(52.4=100),PF0139113=Collagen=PU(11.5=29.4)
C2:
PF0139113=Collagen=PD(22.2=28.0),PF0139113=Collagen=FE(56.3=100),PF0139113=Collagen=PU(4.6=6.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAATTCCTGGCCCTCAAG
R:
CCATCAATGCCTGGAAGACCC
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]