RnoEX6026612 @ rn6
Exon Skipping
Gene
ENSRNOG00000056772 | Col4a6
Description
collagen type IV alpha 6 chain [Source:RGD Symbol;Acc:1589724]
Coordinates
chrX:112411558-112413923:-
Coord C1 exon
chrX:112413762-112413923
Coord A exon
chrX:112413512-112413610
Coord C2 exon
chrX:112411558-112411704
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGGCCCTTACCAGGCA
3' ss Score
8.31
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCCGCCCAGGTCTCCCAGGCCCTCCAGGTCCCCCTGGACCATCCTCAGATCAAGGCGATCCTGGAGACTCTGGCTTCCCTGGAATTCCAGGCCTTCAAGGGCTCAAGGGAAACCAGGGACTTCCGGGTTTCTCTGGGCTCTCTGGAGATCTAGGGCTAAAAG
Seq A exon
GCATGAGAGGGGAACCTGGCCTCATGGGGACTCCTGGCAAGATTGGGCCACCAGGAGACCCAGGATTTCCTGGAATGAAGGGGAAGGCGGGGCCAAGAG
Seq C2 exon
GCTTTTCTGGCCCCCAGGGTGCTCCAGGACACACACCAATTGCTGAAGCTCGGCACGTTCCTCCAGGACCTTTGGGTCTGCCAGGCATTGATGGCATCCCAGGCCTCACAGGAGACCCTGGATCTCAAGGCTCTGTGGGTCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056772-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(71.4=81.8),PF0139113=Collagen=PU(25.0=27.3)
A:
PF0139113=Collagen=FE(55.0=100)
C2:
PF0139113=Collagen=PD(18.3=22.0),PF0139113=Collagen=PU(54.2=64.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCCTCAGATCAAGGCGA
R:
GCAATTGGTGTGTGTCCTGGA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]