MmuEX0012304 @ mm9
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:137607212-137609572:-
Coord C1 exon
chrX:137609411-137609572
Coord A exon
chrX:137609162-137609260
Coord C2 exon
chrX:137607212-137607358
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGGCCCTTACCAGGCA
3' ss Score
8.31
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCCGCCCAGGCCCTCCAGGTCCTCCAGGTCCCCCTGGGCCATCCTCAGATCAAGGCGATCCTGGAGACTCTGGCTTCCCTGGGATTCCAGGCCTTCAAGGGTTCAAGGGAAACCAAGGACTTCCAGGTTTCTCTGGCCTCTCTGGAGAGCTAGGGCTAAAGG
Seq A exon
GCATGAGAGGGGAACCTGGCCTCATGGGGACTCCTGGCAAGATCGGGCAACCAGGAGACCCAGGATTTCCTGGGATGAAGGGGAAGGCGGGGCCAAGAG
Seq C2 exon
GCTTTTCCGGCCCACAGGGAGCTCCAGGACACACACCAATTGCTGAAGCTATGCAGGTTCCTCCAGGACCTTTGGGTCTGCCAGGCATTGATGGTATCCCAGGCCTCATAGGAGACCCTGGGTCTCAAGGCTCTGTGGGTCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'45-46,'45-45,46-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(72.6=81.8),PF0139113=Collagen=PU(24.6=27.3)
A:
PF0139113=Collagen=FE(54.1=100)
C2:
PF0139113=Collagen=PD(19.7=24.0),PF0139113=Collagen=PU(54.2=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGAGACTCTGGCTTCC
R:
GGTCCTGGAGGAACCTGCATA
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: