GgaEX0011969 @ galGal4
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14055856-14057033:+
Coord C1 exon
chr4:14055856-14056017
Coord A exon
chr4:14056506-14056604
Coord C2 exon
chr4:14056887-14057033
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCATCTGTGTACATTTGCAGGTG
3' ss Score
9.51
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTCTTCCAGGTCCTCCGGGACAACGAGGGCCCCCTGGACCAGCTTTTGACCAAGGTGACACAGGCAATCCAGGTTTCCCTGGTGTTCCTGGCTTGCGAGGTGGTAAGGGCGATGTGGGACCAACAGGTCCCATTGGACTCCCTGGCGTATCTGGATTCAAAG
Seq A exon
GTGTCAGAGGTGAGCCTGGTCTCATGGGGATGCCAGGTAAAGATGGGCCTCCAGGGGATCCTGGTTACCCTGGGCAGAAAGGTGGAATGGGACATCGAG
Seq C2 exon
GTCTCCCCGGCCAACCAGGGGCTCCAGGTATAACCCCACAGGCAGAAGAAATCACAGCCCCTGCAGGCTTACCAGGTCTGCCAGGGATTGATGGCGTCCCTGGCTTTGATGGAGATCCTGGATTCCAGGGCCCAGTTGGAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(71.0=80.0),PF0139113=Collagen=PU(24.6=27.3)
A:
PF0139113=Collagen=FE(54.1=100)
C2:
PF0139113=Collagen=PD(19.7=24.0),PF0139113=Collagen=PU(51.7=62.0),PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACCAAGGTGACACAGGC
R:
TGCAGGGGCTGTGATTTCTTC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]