DreEX6007349 @ danRer10
Exon Skipping
Gene
ENSDARG00000052061 | col4a6
Description
collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
Coordinates
chr7:50651889-50652496:-
Coord C1 exon
chr7:50652335-50652496
Coord A exon
chr7:50652135-50652233
Coord C2 exon
chr7:50651889-50652038
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTCTATATTTAAAGGAC
3' ss Score
8.25
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTCCCTTTGGTCCTCCTGGACTCCCTGGTCCACCAGGCCCTGGAACTGTCCAGGGAGACAGAGGAGACCCTGGGTTTCCTGGTCGTCCAGGAATAATAGGACCACGTGGTGAGCCAGGTGGTTTTGGAGCCCCTGGATTACAAGGCAATCCTGGTTTCAAAG
Seq A exon
GACAAAGAGGTGAGCCTGGCTTCAGTGGTGTGCCTGGACGACCAGGGTCTCCTGGAGAACCGGGGGATTATGGCAGAAGTGGACCCAGAGGTCTAAAGG
Seq C2 exon
GTACTTCTGGTCCTGTTGGAAATCCAGGTTTTGTGTTCGCAAGTAACATAACAGCCAGAATGCCATCTGGGGATCCAGGCCAACCAGGGCTTGATGGATTTGCTGGTCAGCCAGGAATACCAGGTCTGCCAGGCAGTCCAGGCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052061-'43-46,'43-45,44-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(73.9=92.7),PF0139113=Collagen=PU(31.3=38.2)
A:
PF0139113=Collagen=FE(49.3=100)
C2:
PF0139113=Collagen=PD(17.9=23.5),PF0139113=Collagen=PU(51.7=60.8),PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGAGACCCTGGGTTTC
R:
TGGATCCCCAGATGGCATTCT
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]