BtaEX6006050 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018986 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:62483696-62488063:-
Coord C1 exon
chrX:62487872-62488063
Coord A exon
chrX:62486168-62486282
Coord C2 exon
chrX:62483696-62483853
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACATGCTTCATGACTTACAGACC
3' ss Score
6.48
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCGGCTATACAATTCATGACAAGCCAAACCCCAGAGGTGAAATCGTAATTGGTGGAAAGAATATCTCCATGGGATATTTTAAAAATGAGGAGAAAACGGCTGAGGATTATTCTGTGGATGAAAATGGCCAAAGGTGGTTTTGCACTGGTGATATTGGAGAATTCCATCCCGATGGGTGTTTACAGATTATCG
Seq A exon
ACCGTAAGAAAGATCTGGTGAAGTTACAAGCAGGAGAATATGTGTCTCTCGGGAAAGTAGAAGCTGCACTGAAGAACTGTCCACTTATTGATAACATCTGTGCTTTTGCCAAAAG
Seq C2 exon
TGACCAGTCCTATGTGATAAGTTTTGTGGTTCCTAATCAGCAAAAGTTGACACTTTTGGCACAACAGAAAGGGGTAGAAGGAACTTGGGTTGATATCTGCAATAACCCTGCCATGGAAGCTGAAATACTGAAAGAGATTAGAGAAGCTGCAAATACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018986-'13-17,'13-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.4=100)
A:
PF0050123=AMP-binding=PD(10.7=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Skipping Isoform:
ENSBTAT00000054636fB356
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACAAGCCAAACCCCAGA
R:
ACCCCTTTCTGTTGTGCCAAA
Band lengths:
253-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]