GgaEX6033623 @ galGal3
Exon Skipping
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13895062-13896767:+
Coord C1 exon
chr4:13895062-13895253
Coord A exon
chr4:13895793-13895907
Coord C2 exon
chr4:13896607-13896767
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCCTCAACTCCTAGACC
3' ss Score
9.35
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGGGCTATACTAACAGAGACAAGCCTAATCCTAGAGGGGAAATTATAATTGGTGGACCTAATGTCTCAATGGGATATTTTAAAAATGAAGAGAAAACAACAGAAGATTTCACCATTGATGAGAATGGTCAGAGATGGTTTTGTACCGGAGATATAGGAGAATTCCATCCAGATGGGTGCCTGCAGATCATAG
Seq A exon
ACCGTAAGAAAGACTTGGTAAAGCTACAAGCTGGGGAATACGTGTCTCTGGGCAAAGTAGAGGCAGCACTGAAGAACTGTTCGTTGATTGATAACATCTGTGCTTATGCCAAAAG
Seq C2 exon
TAGTGACCAGTCTTATGTGATCAGTTTTGTGGTTCCCAATCAGAAGAAGCTGACGGCATTAGCTGAGCAGAAAGGTATAAGTGGAACCTGGGTTGAAATTTGTAACAATCCTACAATGGAAGCTGAAATACTACGAGAAATTAAGGAGGTGGCAAACAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088-'15-15,'15-14,16-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.4=100)
A:
PF0050123=AMP-binding=PD(1.9=23.1),PF131931=AMP-binding_C=PU(20.4=51.3)
C2:
PF131931=AMP-binding_C=FE(55.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCCTAATCCTAGAGGGGA
R:
TTCTGCTCAGCTAATGCCGTC
Band lengths:
246-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]