HsaEX6052914 @ hg19
Exon Skipping
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571]
Coordinates
chrX:108902583-108906631:-
Coord C1 exon
chrX:108906440-108906631
Coord A exon
chrX:108904760-108904874
Coord C2 exon
chrX:108902583-108902740
Length
115 bp
Sequences
Splice sites
3' ss Seq
CATTCTTTATGACTTAACAGATC
3' ss Score
7.38
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCGGTTATACAATTAATGACAAGCCAAACCCCAGAGGTGAAATCGTAATTGGTGGACAGAACATCTCCATGGGATATTTTAAAAATGAAGAGAAAACAGCAGAAGATTATTCTGTGGATGAAAATGGACAAAGGTGGTTTTGCACTGGTGATATTGGAGAATTCCATCCCGATGGATGTTTACAGATTATAG
Seq A exon
ATCGTAAGAAAGATCTAGTGAAGTTACAAGCAGGAGAGTATGTATCTCTTGGGAAAGTAGAAGCTGCACTGAAGAATTGTCCACTTATTGACAACATCTGTGCTTTTGCCAAAAG
Seq C2 exon
TGATCAGTCCTATGTGATCAGTTTTGTGGTTCCTAACCAGAAAAGGTTGACACTTTTGGCACAACAGAAAGGGGTAGAAGGAACTTGGGTTGATATCTGCAATAATCCTGCTATGGAAGCTGAAATACTGAAAGAAATTCGAGAAGCTGCAAATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366-'23-24,'23-22,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.4=100)
A:
PF0050123=AMP-binding=PD(1.9=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAAGCCAAACCCCAGAG
R:
ACCCCTTTCTGTTGTGCCAAA
Band lengths:
252-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)