RnoEX6026662 @ rn6
Exon Skipping
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113604180-113608389:-
Coord C1 exon
chrX:113608198-113608389
Coord A exon
chrX:113605214-113605328
Coord C2 exon
chrX:113604180-113604337
Length
115 bp
Sequences
Splice sites
3' ss Seq
CCATGTTTTTATGATTATAGATC
3' ss Score
5.78
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGGTTATACAGTTCATGATAAGCCAAACCCCAGAGGTGAAATTGTGATTGGAGGCCAGAATATCTCCATGGGATATTTTAAAAATGAAGAGAAAACAGCAGAAGATTATTCTGTGGATGAAAATGGACAAAGGTGGTTTTGCACTGGTGATATTGGAGAATTCCACCCTGATGGATGCTTACAGATTATCG
Seq A exon
ATCGTAAGAAAGATCTGGTGAAGCTGCAAGCCGGAGAGTACGTGTCTCTTGGGAAAGTCGAAGCCGCACTGAAGAATTGTCCACTGATCGACAACATCTGTGCTTTTGCCAAAAG
Seq C2 exon
TGACCAGTCTTATGTGATCAGTTTTGTGGTTCCCAACCAGAAAAAGTTGACTCTTTTGGCACAACAGAAGGGGGTAGAAGGATCTTGGGTTGATATTTGCAATAATCCTGCCATGGAAGCTGAAATACTGAAAGAAATTCGAGAAGCTGCAAATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.4=100)
A:
PF0050123=AMP-binding=PD(1.9=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAAGCCAAACCCCAGAGG
R:
CCCCCTTCTGTTGTGCCAAAA
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]