BtaEX6006216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002668 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:74975675-74985680:-
Coord C1 exon
chrX:74985543-74985680
Coord A exon
chrX:74977153-74977200
Coord C2 exon
chrX:74975675-74975818
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATTTGTCTTTTTTTTTTAAGGAG
3' ss Score
9.16
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAATGGACATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
Seq A exon
GAGATGAAAGAAGAGTTTCTCGAAGGTATGAAGATTGTCAGTCATCAG
Seq C2 exon
GAAATACTTTAGACTCAACATTAGAAAACAGAAGTAGTACAGCAGCACAGTACCTTCAAATTTGTGATAGCATCAATACAAATAAAGTACTTAAACAAAAAACCAAGAAGAGGAGAAGGGGAGAAACGAGGCAGTGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002668-'6-14,'6-12,9-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.765 C2=0.571
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.1=100)
A:
PF047048=Zfx_Zfy_act=FE(5.2=100)
C2:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACCAGAGCCGAATGCAG
R:
TTGAAGGTACTGTGCTGCTGT
Band lengths:
138-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]