HsaEX6052474 @ hg38
Exon Skipping
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:85265118-85270146:+
Coord C1 exon
chrX:85265118-85265255
Coord A exon
chrX:85268294-85268341
Coord C2 exon
chrX:85270003-85270146
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGGAG
3' ss Score
12.2
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAGTGGACATTCAGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
Seq A exon
GAGATGAAAGAAGAGTTTCCCGAAGGTATGAAGATTGTCAAGCATCAG
Seq C2 exon
GAAATACTTTGGACTCAGCATTAGAAAGCAGAAGTAGTACAGCAGCACAGTACCTTCAAATTTGTGACGGCATTAATACAAATAAAGTACTTAAACAAAAAGCCAAAAAGAGGAGAAGGGGAGAAACCAGGCAGTGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-'13-23,'13-20,18-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.588 C2=0.412
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.1=100)
A:
PF047048=Zfx_Zfy_act=FE(5.2=100)
C2:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)
Main Skipping Isoform:
ENST00000360700fB30908
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGCTGGAGTGCTTGACCA
R:
TGTGCTGCTGTACTACTTCTGC
Band lengths:
141-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains