MmuEX0053579 @ mm10
Exon Skipping
Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:112624739-112631969:+
Coord C1 exon
chrX:112624739-112624876
Coord A exon
chrX:112628104-112628148
Coord C2 exon
chrX:112631826-112631969
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAACTAGTCCTTTTTTATAGATG
3' ss Score
5.95
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGGGACAGAAATTGTCACAGAGAGTGAATACAGCAGTGGCCATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAGGAACAGGATGATATCA
Seq A exon
ATGAGAGACGAGTTTCTCGAAGGTATGAAGAATGTCAAGCACCAG
Seq C2 exon
GAAACACTTTTGACTCAGCATTAGAAAACAGAAACACTACAGCAGCACAGTACCTTCAAATTTGTGATAGCATGAACACAAATAAAGTTCTTAAACAAAAAATCAAGAAGAGGAGAAGGGGAGAAACAAGGCAGTGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.532 C2=0.412
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.1=100)
A:
PF047048=Zfx_Zfy_act=FE(4.9=100)
C2:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)
Main Skipping Isoform:
ENSMUST00000113409fB19993
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGCTGGAGTGCTTGACC
R:
GGTACTGTGCTGCTGTAGTGT
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types