HsaEX6052474 @ hg19
Exon Skipping
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:13128]
Coordinates
chrX:84520124-84525152:+
Coord C1 exon
chrX:84520124-84520261
Coord A exon
chrX:84523300-84523347
Coord C2 exon
chrX:84525009-84525152
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGGAG
3' ss Score
12.2
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGGAACAGAAATTGTCACAGAGAGTGAGTACACCAGTGGACATTCAGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAAGAAGAAGATGATATCA
Seq A exon
GAGATGAAAGAAGAGTTTCCCGAAGGTATGAAGATTGTCAAGCATCAG
Seq C2 exon
GAAATACTTTGGACTCAGCATTAGAAAGCAGAAGTAGTACAGCAGCACAGTACCTTCAAATTTGTGACGGCATTAATACAAATAAAGTACTTAAACAAAAAGCCAAAAAGAGGAGAAGGGGAGAAACCAGGCAGTGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-'7-10,'7-8,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=0.510 C2=0.342
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.1=100)
A:
PF047048=Zfx_Zfy_act=FE(5.2=100)
C2:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGCTGGAGTGCTTGACCA
R:
TGTGCTGCTGTACTACTTCTGC
Band lengths:
141-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)