GgaEX6033399 @ galGal3
Exon Skipping
Gene
ENSGALG00000006929 | ZNF711
Description
NA
Coordinates
chr4:8746751-8749713:-
Coord C1 exon
chr4:8749567-8749713
Coord A exon
chr4:8747357-8747404
Coord C2 exon
chr4:8746751-8746786
Length
48 bp
Sequences
Splice sites
3' ss Seq
TAAAATACCATTTTCTGCAGGAG
3' ss Score
6.27
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGGACAGAAATTGTCACAGAGAGTGATTTTCACAATGGACATTCAGTAGCTGGAGTAATTGAACAAGGAGGTGTTGGTAGAATGCAGCGAGAAAAAATGGTTTACATGGCTGTTAAGGACTCTTCTCAGGAAGATGAAGATATTA
Seq A exon
GAGATGACAGAAGACTACCCAGAAGATATGAAGATGGTCAAGCGGCAG
Seq C2 exon
GGAATAACTTGGATACACGATTAGAAAACAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929-'10-11,'10-9,12-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.785 A=1.000 C2=0.580
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(19.8=100)
A:
PF047048=Zfx_Zfy_act=PD(1.6=23.5),PF047048=Zfx_Zfy_act=PU(13.0=41.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATTCAGTAGCTGGAGT
R:
TGTTTTCTAATCGTGTATCCAAGTT
Band lengths:
140-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]