RnoEX0101684 @ rn6
Exon Skipping
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84087540-84092676:+
Coord C1 exon
chrX:84087540-84087677
Coord A exon
chrX:84090238-84090282
Coord C2 exon
chrX:84092533-84092676
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAACTAGTCCTTTTTTATAGATG
3' ss Score
5.95
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGGGACAGAAATTGTCACTGAGAGTGAATACACCAGTGGACATTCTGTAGCTGGAGTGCTTGACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAAGAAGAAGATGATATCA
Seq A exon
ATGAAAGACGAGTTTCCCGAAGATATGAAGATTGTCAAGCCACAG
Seq C2 exon
GAAACACTTTTGACTCTGCATTAGAAAACCGAAGCACGACAGCAGCGCAGTACCTTCAAATTTGTGATAGCATGAACACAAATAAAGTACTGAAACAAAAAATCAAGAAGAGGCGGAGGGGAGAAACAAGGCAGTGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.125 C2=0.224
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(13.2=100)
A:
PF047048=Zfx_Zfy_act=FE(4.3=100)
C2:
PF047048=Zfx_Zfy_act=PD(13.2=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGACCAGAGCCGAATGCAG
R:
ATTTGAAGGTACTGCGCTGCT
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]