Special

BtaEX6006451 @ bosTau6

Exon Skipping

Gene
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84700650-84702449:+
Coord C1 exon
chrX:84700650-84700764
Coord A exon
chrX:84701300-84701554
Coord C2 exon
chrX:84702332-84702449
Length
255 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCCTTGCCTTTGCAGATA
3' ss Score
13.49
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TACTTGTTGGAAAATAACCGAATGGTGAACATTTTCACGGACCTTTACTACCTGACTTTTGTTCAAGAACTCAACAAGTCTCTGAGTACCTGGCAGCCCACGCTCCTCCCTAACA
Seq A exon
ATACGGTGTTCTCCCGAGTAGAGGAAGAGCACCTCTGGGAGTGTAAGCAGCTGGGGGTCTACTCGCCCTTTGTCCTTCTCAACACCCTCATGTTTTTCAACACTAAGTTTTTTGGGCTTCAGACAGCCGAGGAACACATGCAGCTCTCCTTCACCAATGTGGTCCGGCAGTCCCGCAAGTGTACCACCCCTCGGGGCACCACCAAGGTGGTGAGCATCCGCTACTATGCTCCTGTCCGCCAGAGGAAAGGGCGAG
Seq C2 exon
ACACAGGTCCTGGGAAACGGAAGAGAGATGATGAAGCCCCCATTTTAGAGCAGCGTGAGAACCGCATGAATCCCCTCCGCTGCCCTGTCAAGTTCTATGAATTCTATCTCTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-'31-31,'31-30,32-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.035 C2=0.450
Domain overlap (PFAM):

C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(49.4=98.8)
C2:
PF120123=DUF3504=FE(22.7=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTGTTGGAAAATAACCGAATGG
R:
AGAATTCATAGAACTTGACAGGGCA
Band lengths:
220-475
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]