RnoEX0102037 @ rn6
Exon Skipping
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71300266-71303024:-
Coord C1 exon
chrX:71302910-71303024
Coord A exon
chrX:71301625-71301879
Coord C2 exon
chrX:71300266-71300380
Length
255 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGTCCATCACAGATA
3' ss Score
10.63
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TATTTGCTGGAAAATAACCGAATGGTGAACATTTTCACGGACCTTTACTACTTGACTTTCGTTCAAGAACTCAACAAGTCTCTGAGTACCTGGCAGCCCACACTCCTCCCCAACA
Seq A exon
ATACTGTATTCTCCCGTGTGGAGGAAGAACACCTCTGGGAGTGCAAGCAACTGGGGGTTTATTCTCCCTTTGTCCTTCTCAACACCCTCATGTTCTTCAACACTAAGTTTTTTGGACTGCAGACAGCTGAGGAACACATGCAGCTCTCTTTCACTAATGTGGTGCGACAGTCTCGCAAGTGTACCACGCCTCGGGGCACCACAAAGGTGGTGAGCATCCGCTACTATGCCCCAGTCCGACAGAGGAAAGGGCGAG
Seq C2 exon
ACACAGGTCCTGGGAAACGAAAGAGAGAAGATGAAACTATCTTAGAGCAGCGTGAGAATCGCATGAATCCCCTCCGCTGCCCCGTCAAGTTCTATGAGTTCTATCTCTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.436
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(49.7=98.8)
C2:
PF120123=DUF3504=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTGCTGGAAAATAACCGAATGGT
R:
GATAGAACTCATAGAACTTGACGGGG
Band lengths:
220-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]