MmuEX0053928 @ mm9
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98601244-98603930:-
Coord C1 exon
chrX:98603816-98603930
Coord A exon
chrX:98602544-98602798
Coord C2 exon
chrX:98601244-98601358
Length
255 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTGTCCATCACAGATA
3' ss Score
10.6
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TATTTGCTGGAAAATAACCGGATGGTGAACATTTTCACGGACCTTTACTACTTGACTTTCGTTCAAGAACTCAACAAGTCTCTGAGTACCTGGCAGCCCACACTCCTCCCCAACA
Seq A exon
ATACTGTATTCTCCCGTGTGGAGGAAGAACACCTCTGGGAGTGCAAGCAACTGGGGGTTTATTCTCCCTTTGTCCTCCTCAATACCCTCATGTTCTTCAACACTAAGTTTTTTGGACTGCAGACAGCTGAGGAACACATGCAACTCTCTTTCACTAATGTGGTACGGCAGTCTCGCAAGTGTACCACGCCTCGGGGCACCACCAAGGTGGTGAGCATCCGCTACTATGCCCCAGTCCGACAGAGGAAAGGGCGAG
Seq C2 exon
ACACAGGTCCTGGGAAACGAAAGAGAGAAGATGAAACTATCTTAGAGCAGCGTGAGAATCGCATGAATCCCCTCCGCTGCCCCGTCAAGTTCTATGAGTTCTATCTCTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.035 C2=0.436
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(16.5=43.6)
A:
PF120123=DUF3504=PU(49.7=98.8)
C2:
PF120123=DUF3504=FE(22.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCTGGAAAATAACCGGATGG
R:
AGATAGAACTCATAGAACTTGACGGG
Band lengths:
220-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: