HsaEX0072897 @ hg19
Exon Skipping
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70461077-70462934:-
Coord C1 exon
chrX:70462820-70462934
Coord A exon
chrX:70462020-70462274
Coord C2 exon
chrX:70461077-70461194
Length
255 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTTGACCATTGTAGATA
3' ss Score
8.24
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
TACTTGCTGGAAAATAACCGGATGGTGAACATTTTCACGGACCTTTACTACCTGACTTTTGTTCAAGAACTCAACAAGTCTCTGAGTACCTGGCAGCCCACACTCCTCCCCAACA
Seq A exon
ATACGGTGTTCTCTCGAGTGGAGGAGGAGCACCTCTGGGAGTGTAAGCAACTGGGGGTCTACTCGCCCTTTGTCCTCCTCAACACCCTCATGTTCTTCAACACTAAGTTTTTTGGGCTGCAGACAGCTGAGGAACACATGCAACTCTCCTTCACCAATGTGGTGCGGCAGTCCCGCAAGTGTACCACCCCTCGGGGCACCACCAAGGTGGTGAGCATCCGCTACTATGCCCCAGTCCGCCAGAGGAAAGGGCGAG
Seq C2 exon
ACACGGGTCCTGGAAAACGGAAGAGAGAAGATGAAGCCCCTATCTTAGAGCAGCGTGAGAACCGCATGAATCCCCTCCGCTGCCCTGTCAAGTTCTATGAATTCTATCTCTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.035 C2=0.450
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(15.5=41.0)
A:
PF120123=DUF3504=PU(49.4=98.8)
C2:
PF120123=DUF3504=FE(22.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTGCTGGAAAATAACCGGA
R:
AGAATTCATAGAACTTGACAGGGCA
Band lengths:
220-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)